About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30590559_30593662_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30590559 - 30593662
Intron Length:
3104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTATCTTTCAAA
Flanking Amino Acid:
IMRPTDVPDTGLLCDLLWSD
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.8
0.51
1
74.5
33.9
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
59.3
0.28
1.9
73.34
38.4

Associated Gene:

Gene:
PPP1CB
Ensembl Gene ID:
ENSAPLG00000008367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008727
30587287 - 30614883
27597