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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30593735_30598654_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30593735 - 30598654
Intron Length:
4920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTTTGTACTT
Flanking Amino Acid:
VDEKIFCCHGGLSPDLQSME
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84
0.77
0.8
77.4
36
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
50.3
0.09
2.2
78.3
39.3

Associated Gene:

Gene:
PPP1CB
Ensembl Gene ID:
ENSAPLG00000008367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008727
30587287 - 30614883
27597