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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30598760_30599133_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30598760 - 30599133
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCAAA
5'SS Class:
major
3'SS Sequence:
ACTGTTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCTTCCTAATGT
Flanking Amino Acid:
INRIYGFYDECKRRFNIKLW
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.2
34.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
75.8
0.58
0.9
70
35.9
Minor 5ss
41.1
-1
2.9
53.2
44
Minor BPS
50.7
0.1
2.2
75.16
47.6

Associated Gene:

Gene:
PPP1CB
Ensembl Gene ID:
ENSAPLG00000008367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008727
30587287 - 30614883
27597