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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_306093_306640_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
306093 - 306640
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
AAAACCTTAACT
Flanking Amino Acid:
GQCQNGGSCRDLVNGYRCIC
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
43.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
84.3
0.77
0.8
77
37.2
Minor 5ss
39.1
-1.2
3.1
48.3
47.3
Minor BPS
75.9
0.89
1.2
82.1
38.2

Associated Gene:

Gene:
JAG1
Ensembl Gene ID:
ENSAPLG00000009296
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009806
298130 - 331665
33536