About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30657578_30661105_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30657578 - 30661105
Intron Length:
3528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGGC
5'SS Class:
major
3'SS Sequence:
TTCCCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCATTGTTTACT
Flanking Amino Acid:
EMAMALWNNMMEPVGEKQTY
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65
39.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.7
0.71
0.7
80.3
25
Minor 5ss
39.3
-1.2
3.1
49.2
42.4
Minor BPS
49.1
0.01
2.3
71.9
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021973
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033146
30656775 - 30666539
9765