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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_307201_308023_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
307201 - 308023
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGGCCATTCACA
Flanking Amino Acid:
PQWTGKTCQLDANECEGKPC
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
48.9
-0
2
63.04
42.7

Associated Gene:

Gene:
JAG1
Ensembl Gene ID:
ENSAPLG00000009296
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009806
298130 - 331665
33536