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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30762666_30764150_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30762666 - 30764150
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGATACTGACTT
Flanking Amino Acid:
RRELTEKLQAETEVLEEEKS
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
70.3
40.3
Major BPS
79
0.72
1
69
38.9
Major PPT
85.9
0.81
0.8
80.7
31.4
Minor 5ss
34.7
-1.7
3.5
50.7
45.7
Minor BPS
48.2
-0
1.9
67.84
42.6

Associated Gene:

Gene:
FOSL2
Ensembl Gene ID:
ENSAPLG00000009204
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009573
30761759 - 30771814
10056