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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30764259_30767203_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30764259 - 30767203
Intron Length:
2945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CACTTGCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTCTTGGCACT
Flanking Amino Acid:
TVGRRRRDEQLSPEEEEKRR
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
68.2
0.41
0.9
60.8
35
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
42.5
-0.5
2.4
69.31
42

Associated Gene:

Gene:
FOSL2
Ensembl Gene ID:
ENSAPLG00000009204
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009573
30761759 - 30771814
10056