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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30767459_30771715_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30767459 - 30771715
Intron Length:
4257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
CCTTTCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TCTTCTTTTTCT
Flanking Amino Acid:
ETYSGGAAQQKFRVDMPGSG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
76.6
0.6
0.7
69.3
31.3
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
45.6
-0.2
3.6
79.44
43

Associated Gene:

Gene:
FOSL2
Ensembl Gene ID:
ENSAPLG00000009204
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009573
30761759 - 30771814
10056