Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_308138_308683_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

308138 - 308683

Intron Length:

546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGACCT

5'SS Class:

major

3'SS Sequence:

TTCTGCATTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGCAT

U12 Branch Point Sequence:

TTGTTCTGCATT

Flanking Amino Acid:

PGWAGPTCTDNIDDCSPNPC

Intron Amino Acid Position:

380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

64.5

39.6

Major BPS

62.4

0.31

1.4

73.6

41.8

Major PPT

79.9

0.67

0.9

73.1

Minor 5ss

36.5

-1.5

3.2

51.6

39.6

Minor BPS

53.5

0.19

1.9

75.93

41.4

Associated Gene:

Gene:

JAG1

Ensembl Gene ID:

ENSAPLG00000009296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009806

298130 - 331665

33536