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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30816081_30832157_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30816081 - 30832157
Intron Length:
16077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTATTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
MWKDFCFLVHIDLPLYFPRD
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.4
0.84
0.8
85.9
32.9
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
BABAM2
Ensembl Gene ID:
ENSAPLG00000004664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004846
30796848 - 30956202
159355