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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30832241_30833716_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30832241 - 30833716
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
YIAAFLSHFGTGVVEYDAEG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
87.9
29.3
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
74.4
0.55
1
72.1
38
Minor 5ss
47.5
-0.2
2.8
66.5
37.9
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
BABAM2
Ensembl Gene ID:
ENSAPLG00000004664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004846
30796848 - 30956202
159355