Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30833788_30835746_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30833788 - 30835746

Intron Length:

1959

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTGAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TAGCTATTGATT

Flanking Amino Acid:

PQVCQLLTNKVQYVIQGYHK

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.9

80.8

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

77.8

0.63

1.7

92.3

26.6

Minor 5ss

39.8

-1.1

2.9

45.2

Minor BPS

49.6

0.05

1.6

65.91

38.8

Associated Gene:

Gene:

BABAM2

Ensembl Gene ID:

ENSAPLG00000004664

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004846

30796848 - 30956202

159355