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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30835847_30875223_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30835847 - 30875223
Intron Length:
39377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTAAATTAACT
Flanking Amino Acid:
PKLYLSPRIEHALGGSSALH
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
59.8
0.39
1.9
79.31
42.1

Associated Gene:

Gene:
BABAM2
Ensembl Gene ID:
ENSAPLG00000004664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004846
30796848 - 30956202
159355