Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_308798_309247_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

308798 - 309247

Intron Length:

450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TATCCTGCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

TCTCCCATGACA

Flanking Amino Acid:

EGYSGQNCEIAEHACLSDPC

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

85.6

31.2

Major BPS

75.1

0.62

65.6

Major PPT

71.4

0.48

0.9

64.9

36.1

Minor 5ss

39.1

-1.2

3.4

45.5

Minor BPS

62.7

0.39

1.6

73.34

38.1

Associated Gene:

Gene:

JAG1

Ensembl Gene ID:

ENSAPLG00000009296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009806

298130 - 331665

33536