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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30940163_30955957_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30940163 - 30955957
Intron Length:
15795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATCT
Flanking Amino Acid:
NCLRITDLKSGCTSLTPGPS
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.2
0.61
0.8
75
34
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
72.9
0.8
1.6
87.15
38.9

Associated Gene:

Gene:
BABAM2
Ensembl Gene ID:
ENSAPLG00000004664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004846
30796848 - 30956202
159355