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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30962536_30976034_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30962536 - 30976034
Intron Length:
13499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTCCG
5'SS Class:
major
3'SS Sequence:
TAAATTGGAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTGCTTTAAAT
Flanking Amino Acid:
SPISAWAQWQSLTTRLPKAG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
57.4
47.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
56.1
0.14
1.2
50.8
46.5
Minor 5ss
39
-1.2
3
51.3
45.1
Minor BPS
70.2
0.71
1.5
83.47
37.5

Associated Gene:

Gene:
RBKS
Ensembl Gene ID:
ENSAPLG00000013334
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032970
30962441 - 31027554
65114
ENSAPLT00000027888
30962441 - 31027554
65114
ENSAPLT00000019677
30962441 - 31027554
65114
ENSAPLT00000042847
30962441 - 31025071
62631