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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30981671_30984497_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30981671 - 30984497
Intron Length:
2827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
CATGCTCTAACT
Flanking Amino Acid:
ENLKKNGVSTAFVGQTTEAA
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
73.1
0.52
1
78.3
27.7
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
56.4
0.28
1.8
73.45
43.5

Associated Gene:

Gene:
RBKS
Ensembl Gene ID:
ENSAPLG00000013334
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027017
30975656 - 31024447
48792
ENSAPLT00000040142
30958806 - 31025071
66266
ENSAPLT00000019677
30962441 - 31027554
65114
ENSAPLT00000040066
30972496 - 31027410
54915
ENSAPLT00000013892
30958806 - 31024544
65739
ENSAPLT00000033730
30958806 - 31026327
67522
ENSAPLT00000027888
30962441 - 31027554
65114
ENSAPLT00000042847
30962441 - 31025071
62631