About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30991189_30996219_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30991189 - 30996219
Intron Length:
5031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
EALKMARASGVKTLFNPAPA
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
RBKS
Ensembl Gene ID:
ENSAPLG00000013334
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019677
30962441 - 31027554
65114
ENSAPLT00000033730
30958806 - 31026327
67522
ENSAPLT00000013892
30958806 - 31024544
65739
ENSAPLT00000032970
30962441 - 31027554
65114
ENSAPLT00000042847
30962441 - 31025071
62631
ENSAPLT00000027888
30962441 - 31027554
65114
ENSAPLT00000040142
30958806 - 31025071
66266
ENSAPLT00000027017
30975656 - 31024447
48792
ENSAPLT00000040066
30972496 - 31027410
54915