Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30996312_30999740_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30996312 - 30999740

Intron Length:

3429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGATG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTGTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

GCAGCTTTAATT

Flanking Amino Acid:

SDVFCCNETENKSLKMPAIL

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

75.3

40.4

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

83.7

0.76

0.8

79.1

32.9

Minor 5ss

35.9

-1.6

3.2

48.4

47.4

Minor BPS

62.1

0.46

1.4

68.89

42.7

Associated Gene:

Gene:

RBKS

Ensembl Gene ID:

ENSAPLG00000013334

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042847

30962441 - 31025071

62631

ENSAPLT00000019677

30962441 - 31027554

65114