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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31006176_31024273_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31006176 - 31024273
Intron Length:
18098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GAGGCTTTAACT
Flanking Amino Acid:
AGKVRAVDTTGAGDSFVGAL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
79.3
37.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.7
0.71
0.8
74.7
40
Minor 5ss
45.5
-0.5
3.1
67.3
43.8
Minor BPS
66.4
0.59
1.4
73.61
43.3

Associated Gene:

Gene:
RBKS
Ensembl Gene ID:
ENSAPLG00000013334
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027017
30975656 - 31024447
48792
ENSAPLT00000042847
30962441 - 31025071
62631
ENSAPLT00000019677
30962441 - 31027554
65114
ENSAPLT00000040066
30972496 - 31027410
54915
ENSAPLT00000013892
30958806 - 31024544
65739
ENSAPLT00000032970
30962441 - 31027554
65114
ENSAPLT00000027888
30962441 - 31027554
65114