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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31024376_31024757_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31024376 - 31024757
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGTC
5'SS Class:
major
3'SS Sequence:
CTTGTTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
TCTTGTTCCACC
Flanking Amino Acid:
MVRKCNCIASVPTSPSWPRK
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67
39
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
74.2
0.54
0.9
67.1
39.2
Minor 5ss
35.9
-1.6
3.5
50.6
46.1
Minor BPS
45.5
-0.3
2.3
61.68
44.3

Associated Gene:

Gene:
RBKS
Ensembl Gene ID:
ENSAPLG00000013334
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042847
30962441 - 31025071
62631