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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31024408_31024516_F

Intron Information:

Intron Rank:
8
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
31024408 - 31024516
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTATCCTTA
5'SS Class:
strong_minor
3'SS Sequence:
CCCGACTGCACAG|C
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAGCCCAGACT
Flanking Amino Acid:
VSVQAAGTQSSCSPPLTGKS
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.1
-0.1
1.4
51.2
42.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
59.2
0.21
1
51.8
36.5
Minor 5ss
86.9
1.24
1.2
81.6
32.5
Minor BPS
48.2
-0
2.1
72.69
44.2

Associated Gene:

Gene:
RBKS
Ensembl Gene ID:
ENSAPLG00000013334
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013892
30958806 - 31024544
65739