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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31025305_31027422_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31025305 - 31027422
Intron Length:
2118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GGGTTCTTAATA
Flanking Amino Acid:
KLVLLRYDPIAKQRVLFTEK
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
37.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84.8
0.78
0.6
80.7
24.8
Minor 5ss
30
-2.3
3.5
41.5
45.4
Minor BPS
69
0.59
1.2
68.35
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013328
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013873
31025255 - 31030211
4957