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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31113836_31125378_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31113836 - 31125378
Intron Length:
11543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TATTCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTCTTTTTATTC
Flanking Amino Acid:
GTKTRVIKIRSINGGRPPPH
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
66.1
40.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.8
74.6
30.2
Minor 5ss
42.5
-0.8
2.8
53.5
43.7
Minor BPS
53.5
0.09
1.6
60.49
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013296
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013840
31077096 - 31125507
48412