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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31165294_31167850_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31165294 - 31167850
Intron Length:
2557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTATCGTTATTT
Flanking Amino Acid:
ITEKLKASGKAQSQPAAQDS
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
74.6
0.55
0.9
69.6
41.4
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
56.5
0.28
2.3
80.58
41.6

Associated Gene:

Gene:
SLC4A1AP
Ensembl Gene ID:
ENSAPLG00000013096
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013649
31165100 - 31173462
8363