Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31167921_31169122_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31167921 - 31169122

Intron Length:

1202

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGATAAA

U12 Branch Point Sequence:

TTTTCTCTTATA

Flanking Amino Acid:

EEKPETYDSLVAKLKESENE

Intron Amino Acid Position:

422

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.5

37.2

Major BPS

54.7

0.12

1.2

56.1

37.3

Major PPT

88.8

0.87

0.6

84.7

23.2

Minor 5ss

-1.9

2.9

37.4

41.9

Minor BPS

57.1

0.22

1.9

75.73

35.3

Associated Gene:

Gene:

SLC4A1AP

Ensembl Gene ID:

ENSAPLG00000013096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013649

31165100 - 31173462

8363