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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31169284_31169418_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31169284 - 31169418
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TAACCTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAC
U12 Branch Point Sequence:
TTTCGTTTAACC
Flanking Amino Acid:
DARGVLRQEAVSRKRKSKNW
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
71.9
0.54
1.2
75.6
36.6
Major PPT
73.7
0.53
0.9
65.4
40.5
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
68.1
0.55
1.7
79.59
35.6

Associated Gene:

Gene:
SLC4A1AP
Ensembl Gene ID:
ENSAPLG00000013096
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013649
31165100 - 31173462
8363