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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31169559_31170416_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
31169559 - 31170416
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTGAACTGAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTCTCTGATC
Flanking Amino Acid:
RGHNSWLCRVKLPVDDASGK
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
53.7
0.09
1.1
47.1
44.5
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
59.5
0.28
1.6
71.05
34.2

Associated Gene:

Gene:
SLC4A1AP
Ensembl Gene ID:
ENSAPLG00000013096
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013649
31165100 - 31173462
8363