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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31170478_31171250_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31170478 - 31171250
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
ACTACACCAACT
Flanking Amino Acid:
KALQGFFDREGEELEYEYDD
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
85.1
0.79
0.7
78.2
30.6
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
45.1
-0.2
2.1
65.99
43.7

Associated Gene:

Gene:
SLC4A1AP
Ensembl Gene ID:
ENSAPLG00000013096
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013649
31165100 - 31173462
8363