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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31171374_31172075_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31171374 - 31172075
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTCAATATCT
Flanking Amino Acid:
NTEMSCSWGMGEDAEEDDAE
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.3
40.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89
0.88
0.7
81.2
36.5
Minor 5ss
41.6
-0.9
2.9
51
45.2
Minor BPS
53.1
0.17
2.1
81.09
39.9

Associated Gene:

Gene:
SLC4A1AP
Ensembl Gene ID:
ENSAPLG00000013096
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013649
31165100 - 31173462
8363