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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31174267_31180754_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31174267 - 31180754
Intron Length:
6488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAG
U12 Branch Point Sequence:
GGTGTGCTATTT
Flanking Amino Acid:
RHSDPESDFYRGKGEPVTEL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
67.5
40.3
Major BPS
49
-0
1.8
57.1
49.4
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
40.2
-1.1
2.7
49.2
47.1
Minor BPS
37
-0.9
2.3
53.22
42.4

Associated Gene:

Gene:
SUPT7L
Ensembl Gene ID:
ENSAPLG00000013086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013626
31173854 - 31188892
15039