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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31183200_31187041_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31183200 - 31187041
Intron Length:
3842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGTT
5'SS Class:
major
3'SS Sequence:
TTCCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTCTGTTACT
Flanking Amino Acid:
LEVEASPQTSGAEVNASPLW
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
70.2
40.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.4
0.75
0.7
77.1
31.6
Minor 5ss
33.1
-1.9
4.1
54.5
49.7
Minor BPS
49.1
0.01
2.3
72.39
44.6

Associated Gene:

Gene:
SUPT7L
Ensembl Gene ID:
ENSAPLG00000013086
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013626
31173854 - 31188892
15039