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Intron Name: Anas_platyrhynchos_platyrhynchos_3_313658_314645_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

313658 - 314645

Intron Length:

988

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTGAT

5'SS Class:

major

3'SS Sequence:

TCTTTTTTAACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TCTTTTTTAACA

Flanking Amino Acid:

EGWMGPECNKAICRQGCSPK

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

75.2

34.3

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

86.9

0.83

0.8

84.4

Minor 5ss

36.8

-1.5

3.1

49.5

46.8

Minor BPS

0.94

82.25

33.1

Associated Gene:

Gene:

JAG1

Ensembl Gene ID:

ENSAPLG00000009296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009806

298130 - 331665

33536