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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31400828_31404272_R

Intron Information:

Intron Rank:
135336
Intron Class:
major
Intron Phase:
Intron Coordinates:
31400828 - 31404272
Intron Length:
3445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.8
0.49
1.1
69.1
40.6
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
66.2
0.59
1.7
84.98
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041200
31400360 - 31404926
4567