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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31413288_31435998_F

Intron Information:

Intron Rank:
133512
Intron Class:
major
Intron Phase:
Intron Coordinates:
31413288 - 31435998
Intron Length:
22711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
ACTAGATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65
41.7
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
44.3
-0.6
2.8
53.9
44.3
Minor BPS
51.4
0.12
2.1
72.39
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021813
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042319
31413190 - 31440168
26979