About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31437205_31438174_F

Intron Information:

Intron Rank:
133514
Intron Class:
major
Intron Phase:
Intron Coordinates:
31437205 - 31438174
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
TTGTCTTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
84.5
0.78
0.7
77.5
31.3
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
45.3
-0.2
3.6
79.44
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021813
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042319
31413190 - 31440168
26979