About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31458432_31459023_F

Intron Information:

Intron Rank:
148376
Intron Class:
major
Intron Phase:
Intron Coordinates:
31458432 - 31459023
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
GTAGTCTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GGTTATATATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
77.3
0.61
0.9
73.5
41.6
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
46.6
-0.1
2
67.73
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044533
31458282 - 31503416
45135