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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31459200_31469872_F

Intron Information:

Intron Rank:
148377
Intron Class:
major
Intron Phase:
Intron Coordinates:
31459200 - 31469872
Intron Length:
10673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTTATGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
68.8
0.42
1
69.7
34.5
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
49
0.01
2.2
74.96
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044533
31458282 - 31503416
45135