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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31469941_31472480_F

Intron Information:

Intron Rank:
148374
Intron Class:
major
Intron Phase:
Intron Coordinates:
31469941 - 31472480
Intron Length:
2540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTCTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
34.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
95.3
1.02
0.5
91.2
20.6
Minor 5ss
29.3
-2.4
3.3
29.9
43.1
Minor BPS
63.5
0.42
1.6
76.13
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029895
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029237
31469910 - 31514987
45078
ENSAPLT00000047032
31469265 - 31503416
34152
ENSAPLT00000044533
31458282 - 31503416
45135