Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_314901_320334_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

314901 - 320334

Intron Length:

5434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

TTCCAACATCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTAAA

U12 Branch Point Sequence:

TCTCTTCCAACA

Flanking Amino Acid:

EAWDYNDNSTNPDRIIEKAS

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

74.3

34.1

Major BPS

63.9

0.35

63.9

30.3

Major PPT

64.8

0.33

0.9

55.9

39.1

Minor 5ss

38.9

-1.3

2.7

34.4

Minor BPS

47.2

-0.2

1.8

61.19

Associated Gene:

Gene:

JAG1

Ensembl Gene ID:

ENSAPLG00000009296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009806

298130 - 331665

33536