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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31534086_31535436_F

Intron Information:

Intron Rank:
135867
Intron Class:
major
Intron Phase:
Intron Coordinates:
31534086 - 31535436
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
ATTGTGTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
85.6
0.8
0.7
84.2
23.8
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
48.5
-0
2.3
73.91
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023170
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034651
31533843 - 31548809
14967