About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31537908_31546268_F

Intron Information:

Intron Rank:
135869
Intron Class:
major
Intron Phase:
Intron Coordinates:
31537908 - 31546268
Intron Length:
8361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
TTTCCCACAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
80.4
0.68
0.7
75.4
26.8
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
52.2
0.07
1.9
72.27
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023170
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037749
31515357 - 31548809
33453
ENSAPLT00000034651
31533843 - 31548809
14967