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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31581956_31758084_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
31581956 - 31758084
Intron Length:
176129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCTTGTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.7
0.8
0.8
80.8
30.9
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
54.7
0.22
2
76.22
41

Associated Gene:

Gene:
LRFN2
Ensembl Gene ID:
ENSAPLG00000012986
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013515
31578187 - 31799373
221187