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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31843315_31862080_R

Intron Information:

Intron Rank:
136875
Intron Class:
major
Intron Phase:
Intron Coordinates:
31843315 - 31862080
Intron Length:
18766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
ACTCATGTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
75.9
34.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
81.7
0.71
0.8
75.6
33
Minor 5ss
42.1
-0.9
3.1
51.6
45.1
Minor BPS
41.7
-0.5
2.2
60.16
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019132
31843012 - 31862349
19338