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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31908690_31957004_R

Intron Information:

Intron Rank:
141207
Intron Class:
major
Intron Phase:
Intron Coordinates:
31908690 - 31957004
Intron Length:
48315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TACCATATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
87.4
0.84
0.7
80.3
31.8
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
47.7
-0
1.7
64.54
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029732
31905827 - 31957041
51215