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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31957127_31963160_R

Intron Information:

Intron Rank:
141203
Intron Class:
major
Intron Phase:
Intron Coordinates:
31957127 - 31963160
Intron Length:
6034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
82.5
33.6
Minor 5ss
32.1
-2
2.8
39.3
41.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017629
31955671 - 31963322
7652