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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_31957127_31980938_R

Intron Information:

Intron Rank:
141209
Intron Class:
major
Intron Phase:
Intron Coordinates:
31957127 - 31980938
Intron Length:
23812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.5
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
82.5
33.6
Minor 5ss
43.5
-0.7
2.6
60.2
44.3
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043272
31957062 - 31981564
24503