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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32016584_32019753_F

Intron Information:

Intron Rank:
146132
Intron Class:
major
Intron Phase:
Intron Coordinates:
32016584 - 32019753
Intron Length:
3170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTGCGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGCTAT
U12 Branch Point Sequence:
TTAGCTATACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
50.9
0.02
1.4
50.5
44.9
Major PPT
67.5
0.39
1.1
65.9
45.3
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
49.5
0.04
2
73.34
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028719
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040930
32016410 - 32020690
4281