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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_32136796_32142726_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32136796 - 32142726
Intron Length:
5931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
PVRAPTATAQELQSSGRGRF
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
100
1.24
0.5
100
0
Major PPT
85.2
0.79
0.8
80.7
30.4
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
MOCS1
Ensembl Gene ID:
ENSAPLG00000012806
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021575
32136676 - 32165302
28627
ENSAPLT00000013353
32136676 - 32166462
29787